2H62 Hormone Growth Factor date May 30, 2006
title Crystal Structure Of A Ternary Ligand-Receptor Complex Of Bmp-2
authors T.D.Mueller
compound source
Molecule: Bone Morphogenetic Protein 2
Chain: A, B
Synonym: Bmp-2, Bmp-2a
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bmp2, Bmp2a
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Bone Morphogenetic Protein Receptor Type Ia
Chain: C
Fragment: Extracellular Domain
Synonym: Serinethreonine-Protein Kinase Receptor R5, Skr5, Activin Receptor-Like Kinase 3, Alk-3, Cd292 Antigen;
Ec: 2.7.11.30
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Acvr2b Protein
Chain: D
Fragment: Extracellular Domain
Synonym: Activin Receptor Type Iib
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bmpr1a, Acvrlk3, Alk3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.216 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.131 65.368 114.067 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand
enzyme Transferase E.C.2.7.11.30 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


D, C


Primary referenceA silent H-bond can be mutationally activated for high-affinity interaction of BMP-2 and activin type IIB receptor., Weber D, Kotzsch A, Nickel J, Harth S, Seher A, Mueller U, Sebald W, Mueller TD, BMC Struct Biol. 2007 Feb 12;7:6. PMID:17295905
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (2h62.pdb1.gz) 68 Kb
  • CSU: Contacts of Structural Units for 2H62
  • Likely Quarternary Molecular Structure file(s) for 2H62
  • Structure Factors (388 Kb)
  • Retrieve 2H62 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2H62 from S2C, [Save to disk]
  • Re-refined 2h62 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2H62 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2H62
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2H62, from MSDmotif at EBI
  • Fold representative 2h62 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2h62_C] [2h62] [2h62_B] [2h62_A] [2h62_D]
  • SWISS-PROT database: [Q13705] [P12643] [P36894]
  • Domain organization of [AVR2B_HUMAN] [BMP2_HUMAN] [BMR1A_HUMAN] by SWISSPFAM
  • Domain found in 2H62: [TGFB ] by SMART
  • Other resources with information on 2H62
  • Community annotation for 2H62 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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