2H8L Isomerase date Jun 07, 2006
title Crystal Structure Of The Bb' Fragment Of Erp57
authors G.Kozlov, J.D.Schrag, M.Cygler, K.Gehring
compound source
Molecule: Protein Disulfide-Isomerase A3
Chain: A, B, C
Fragment: Bb' Fragment
Synonym: Disulfide Isomerase Er-60, Erp60, 58 Kda Microsoma P58, Erp57, 58 Kda Glucose-Regulated Protein;
Ec: 5.3.4.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pdia3, Erp60, Grp58
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-1
symmetry Space Group: P 1 21 1
R_factor 0.194 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.340 62.415 99.293 90.00 98.40 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand MSE enzyme Isomerase E.C.5.3.4.1 BRENDA
Primary referenceCrystal Structure of the bb' Domains of the Protein Disulfide Isomerase ERp57., Kozlov G, Maattanen P, Schrag JD, Pollock S, Cygler M, Nagar B, Thomas DY, Gehring K, Structure. 2006 Aug;14(8):1331-9. PMID:16905107
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (131 Kb) [Save to disk]
  • Biological Unit Coordinates (2h8l.pdb1.gz) 43 Kb
  • Biological Unit Coordinates (2h8l.pdb2.gz) 42 Kb
  • Biological Unit Coordinates (2h8l.pdb3.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 2H8L
  • CSU: Contacts of Structural Units for 2H8L
  • Likely Quarternary Molecular Structure file(s) for 2H8L
  • Structure Factors (902 Kb)
  • Retrieve 2H8L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2H8L from S2C, [Save to disk]
  • Re-refined 2h8l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2H8L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2H8L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2H8L, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2h8l_B] [2h8l_A] [2h8l] [2h8l_C]
  • SWISS-PROT database: [P30101]
  • Domain organization of [PDIA3_HUMAN] by SWISSPFAM
  • Other resources with information on 2H8L
  • Community annotation for 2H8L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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