2H94 Oxidoreductase date Jun 08, 2006
title Crystal Structure And Mechanism Of Human Lysine-Specific Dem
authors P.Stavropoulos, G.Blobel, A.Hoelz
compound source
Molecule: Lysine-Specific Histone Demethylase 1
Chain: A
Synonym: Amine Oxidase Flavin-Containing Domain Protein 2, Hdac Complex Protein Bhc110;
Ec: 1.-.-.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Aof2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 61 2 2
R_factor 0.229 R_Free 0.281
crystal
cell
length a length b length c angle alpha angle beta angle gamma
187.943 187.943 108.741 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.90 Å
ligand FAD, HG enzyme Oxidoreductase E.C.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure and mechanism of human lysine-specific demethylase-1., Stavropoulos P, Blobel G, Hoelz A, Nat Struct Mol Biol. 2006 Jun 25;. PMID:16799558
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (2h94.pdb1.gz) 106 Kb
  • LPC: Ligand-Protein Contacts for 2H94
  • CSU: Contacts of Structural Units for 2H94
  • Likely Quarternary Molecular Structure file(s) for 2H94
  • Structure Factors (246 Kb)
  • Retrieve 2H94 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2H94 from S2C, [Save to disk]
  • Re-refined 2h94 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2H94 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2H94
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2H94, from MSDmotif at EBI
  • Fold representative 2h94 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2h94] [2h94_A]
  • SWISS-PROT database: [O60341]
  • Domain organization of [KDM1_HUMAN] by SWISSPFAM
  • Other resources with information on 2H94
  • Community annotation for 2H94 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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