2H96 Transcription date Jun 09, 2006
title Discovery Of Potent, Highly Selective, And Orally Bioavailab Pyridine Carboxamide C-Jun Nh2-Terminal Kinase Inhibitors
authors C.Abad-Zapatero
compound source
Molecule: Mitogen-Activated Protein Kinase 8
Chain: A, B
Fragment: Jnk1-(1-364)-6his
Synonym: Stress-Activated Protein Kinase Jnk1, C-Jun N-Term Kinase 1, Jnk-46;
Ec: 2.7.11.24
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mapk8, Jnk1, Prkm8
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Pet28a

Molecule: C-Jun-Amino-Terminal Kinase-Interacting Protein 1
Chain: F, G
Fragment: Pepjip1 Peptide
Synonym: Jnk-Interacting Protein 1, Jip-1, Jnk Map Kinase S Protein 1, Islet-Brain 1, Ib-1, Mitogen-Activated Protein K Interacting Protein 1;
Engineered: Yes

Synthetic: Yes
Other_details: The Sequence Is Found Naturally In Homo Sapi (Human).
symmetry Space Group: P 32 2 1
R_factor 0.225 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
155.660 155.660 125.163 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.00 Å
ligand 893, GOL, SO4 BindingDB enzyme Transferase E.C.2.7.11.24 BRENDA
Primary referenceDiscovery of potent, highly selective, and orally bioavailable pyridine carboxamide c-Jun NH2-terminal kinase inhibitors., Zhao H, Serby MD, Xin Z, Szczepankiewicz BG, Liu M, Kosogof C, Liu B, Nelson LT, Johnson EF, Wang S, Pederson T, Gum RJ, Clampit JE, Haasch DL, Abad-Zapatero C, Fry EH, Rondinone C, Trevillyan JM, Sham HL, Liu G, J Med Chem. 2006 Jul 27;49(15):4455-8. PMID:16854050
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (131 Kb) [Save to disk]
  • Biological Unit Coordinates (2h96.pdb1.gz) 64 Kb
  • Biological Unit Coordinates (2h96.pdb2.gz) 64 Kb
  • Biological Unit Coordinates (2h96.pdb3.gz) 124 Kb
  • LPC: Ligand-Protein Contacts for 2H96
  • CSU: Contacts of Structural Units for 2H96
  • Likely Quarternary Molecular Structure file(s) for 2H96
  • Retrieve 2H96 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2H96 from S2C, [Save to disk]
  • View 2H96 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2H96
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2H96, from MSDmotif at EBI
  • Fold representative 2h96 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2h96_F] [2h96_A] [2h96_G] [2h96] [2h96_B]
  • SWISS-PROT database: [Q9UQF2] [P45983]
  • Domain organization of [JIP1_HUMAN] [MK08_HUMAN] by SWISSPFAM
  • Domain found in 2H96: [S_TKc ] by SMART
  • Alignments of the sequence of 2H96 with the sequences similar proteins can be viewed for 2H96's classification [JIP1_HUMAN] [MK08_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [JIP1_HUMAN] [MK08_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2H96
  • Community annotation for 2H96 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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