2HAI Transferase date Jun 12, 2006
title Crystal Structure Of Hcv Ns5b Rna Polymerase In Complex With Novel Class Of Dihydropyrone-Containing Inhibitor.
authors H.Li, R.L.Love
compound source
Molecule: Hepatitis C Virus Ns5b Rna Polymerase
Chain: A
Fragment: Residues 2419-2988
Ec: 2.7.7.48
Engineered: Yes
Mutation: Yes
Organism_scientific: Hepatitis C Virus
Organism_taxid: 11103
Strain: Genotype 1b
Gene: Ns5b
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Psw504v
symmetry Space Group: P 41 21 2
R_factor 0.215 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.255 83.255 179.830 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.58 Å
ligand CME, CSD, PFI enzyme Transferase E.C.2.7.7.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIdentification and structure-based optimization of novel dihydropyrones as potent HCV RNA polymerase inhibitors., Li H, Tatlock J, Linton A, Gonzalez J, Borchardt A, Dragovich P, Jewell T, Prins T, Zhou R, Blazel J, Parge H, Love R, Hickey M, Doan C, Shi S, Duggal R, Lewis C, Fuhrman S, Bioorg Med Chem Lett. 2006 Sep 15;16(18):4834-8. Epub 2006 Jul 7. PMID:16824756
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (2hai.pdb1.gz) 100 Kb
  • LPC: Ligand-Protein Contacts for 2HAI
  • CSU: Contacts of Structural Units for 2HAI
  • Likely Quarternary Molecular Structure file(s) for 2HAI
  • Retrieve 2HAI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HAI from S2C, [Save to disk]
  • View 2HAI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HAI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2HAI, from MSDmotif at EBI
  • Fold representative 2hai from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hai_A] [2hai]
  • SWISS-PROT database: [P26663]
  • Domain organization of [POLG_HCVBK] by SWISSPFAM
  • Other resources with information on 2HAI
  • Community annotation for 2HAI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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