2HDL Cytokine date Jun 20, 2006
title Solution Structure Of Brakcxcl14
authors F.C.Peterson, J.A.Thorpe, A.G.Harder, B.F.Volkman, S.R.Schwarze
compound source
Molecule: Small Inducible Cytokine B14
Chain: A
Synonym: Cxcl14, Chemokine Brak
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cxcl14, Njac, Scyb14
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Sg13009[Prep4]
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe308ht
methodSolution NMR
note 2HDL is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A
  • cytokine activity


  • Primary referenceStructural Determinants Involved in the Regulation of CXCL14/BRAK Expression by the 26 S Proteasome., Peterson FC, Thorpe JA, Harder AG, Volkman BF, Schwarze SR, J Mol Biol. 2006 Nov 3;363(4):813-22. Epub 2006 Aug 26. PMID:16987528
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (499 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2HDL
  • Original NMR restraints for 2HDL from PDB
  • Retrieve 2HDL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HDL from S2C, [Save to disk]
  • View 2HDL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HDL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2HDL, from MSDmotif at EBI
  • Fold representative 2hdl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hdl_A] [2hdl]
  • SWISS-PROT database: [O95715]
  • Domain organization of [CXL14_HUMAN] by SWISSPFAM
  • Domain found in 2HDL: [SCY ] by SMART
  • Other resources with information on 2HDL
  • Community annotation for 2HDL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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