2HDM Cytokine date Jun 20, 2006
title Solution Structure Of V21cv59c Lymphotactinxcl1
authors B.F.Volkman, R.L.Tuinstra, F.C.Peterson, E.S.Elgin
compound source
Molecule: Lymphotactin
Chain: A
Synonym: Xcl1, Cytokine Scm-1, Atac, Lymphotaxin, Scm-1-Alp Inducible Cytokine C1, Xc Chemokine Ligand 1;
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Xcl1, Ltn, Scyc1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Sg13009[Prep4]
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe308ht
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A
  • chemokine receptor binding
  • negative regulation of inter...

    • Primary referenceAn engineered second disulfide bond restricts lymphotactin/XCL1 to a chemokine-like conformation with XCR1 agonist activity., Tuinstra RL, Peterson FC, Elgin ES, Pelzek AJ, Volkman BF, Biochemistry. 2007 Mar 13;46(10):2564-73. Epub 2007 Feb 16. PMID:17302442
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (446 Kb) [Save to disk]
  • Biological Unit Coordinates (2hdm.pdb1.gz) 22 Kb
  • CSU: Contacts of Structural Units for 2HDM
  • Original NMR restraints for 2HDM from PDB
  • Retrieve 2HDM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HDM from S2C, [Save to disk]
    • View 2HDM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2HDM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HDM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hdm] [2hdm_A]
  • SWISS-PROT database: [P47992]
  • Domain organization of [XCL1_HUMAN] by SWISSPFAM
  • Domain found in 2HDM: [SCY ] by SMART
    • Other resources with information on 2HDM
  • Community annotation for 2HDM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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