2HE0 Signaling Protein date Jun 21, 2006
title Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
authors D.Gupta, M.T.Ehebauer, D.Y.Chirgadze, A.Martinez Arias, T.L.Blundell
compound source
Molecule: Notch1 Preproprotein Variant
Chain: A, B
Fragment: Ankyrin Domain, Residues 1873-2115
Synonym: Human Notch Ankyrin Domain Mutant
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Notch 1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet41a
symmetry Space Group: P 65
R_factor 0.188 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
96.982 96.982 108.719 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand EDO enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (2he0.pdb1.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 2HE0
  • CSU: Contacts of Structural Units for 2HE0
  • Likely Quarternary Molecular Structure file(s) for 2HE0
  • Structure Factors (673 Kb)
  • Retrieve 2HE0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HE0 from S2C, [Save to disk]
  • Re-refined 2he0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2HE0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HE0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2HE0, from MSDmotif at EBI
  • Fold representative 2he0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2he0] [2he0_B] [2he0_A]
  • SWISS-PROT database: [P46531]
  • Domain organization of [NOTC1_HUMAN] by SWISSPFAM
  • Domain found in 2HE0: [ANK ] by SMART
  • Other resources with information on 2HE0
  • Community annotation for 2HE0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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