2HE7 Cell Adhesion date Jun 21, 2006
title Ferm Domain Of Epb41l3 (Dal-1)
authors B.M.Hallberg, R.D.Busam, C.Arrowsmith, H.Berglund, R.Collins, A.E M.Ehn, S.Flodin, A.Flores, S.Graslund, M.Hammarstrom, L.H.Schiav I.Johansson, M.Hogbom, T.Karlberg, T.Kotenyova, J.Nilvebrandt, P P.Stenmark, P.Nordlund, P.Nilsson-Ehle, T.Nyman, D.Ogg, J.Sagema M.Sundstrom, J.Uppenberg, S.Van Den Berg, J.Weigelt, C.Persson, A.G.Thorsell, Structural Genomics Consortium (Sgc)
compound source
Molecule: Band 4.1-Like Protein 3
Chain: A
Fragment: Ferm Domain (Residues 108-390)
Synonym: 4.1b, Differentially Expressed In Adenocarcinoma O Protein 1, Dal-1;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Epb41l3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 65
R_factor 0.187 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
135.500 135.500 49.800 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
Primary referenceStructural basis of tumor suppressor in lung cancer 1 (TSLC1) binding to differentially expressed in adenocarcinoma of the lung (DAL-1/4.1B)., Busam RD, Thorsell AG, Flores A, Hammarstrom M, Persson C, Obrink B, Hallberg BM, J Biol Chem. 2010 Dec 3. PMID:21131357
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (2he7.pdb1.gz) 56 Kb
  • CSU: Contacts of Structural Units for 2HE7
  • Likely Quarternary Molecular Structure file(s) for 2HE7
  • Structure Factors (269 Kb)
  • Retrieve 2HE7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HE7 from S2C, [Save to disk]
  • Re-refined 2he7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2HE7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • On AstexViewer, from MSD-EBI (viewer documentation).
  • On RasMol (Install RasMol freeware) Here's help on how to use RasMol.
    • Visual 3D analysis of 2HE7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2HE7, from MSDmotif at EBI
  • Fold representative 2he7 from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2he7_A]
  • SWISS-PROT database: [Q9Y2J2]
  • Domain organization of [E41L3_HUMAN] by SWISSPFAM
  • Domain found in 2HE7: [B41 ] by SMART
  • Alignments of the sequence of 2HE7 with the sequences similar proteins can be viewed for 2HE7's classification [E41L3_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [E41L3_HUMAN] at ProtoMap. Click on the Cluster number.
    • Other resources with information on 2HE7
  • Community annotation for 2HE7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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