2HEI Transport Protein date Jun 21, 2006
title Crystal Structure Of Human Rab5b In Complex With Gdp
authors B.Hong, L.Shen, J.Wang, W.Tempel, R.Landry, C.H.Arrowsmith, A.M.Ed M.Sundstrom, J.Weigelt, A.Bochkarev, H.Park, Structural Genomic Consortium (Sgc)
compound source
Molecule: Ras-Related Protein Rab-5b
Chain: A, B
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rab5b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Codonplus (De-3)-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P28a-Lic
symmetry Space Group: P 21 21 21
R_factor 0.262 R_Free 0.294
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.302 78.370 95.501 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.55 Å
ligand D1D, GDP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (2hei.pdb1.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 2HEI
  • CSU: Contacts of Structural Units for 2HEI
  • Likely Quarternary Molecular Structure file(s) for 2HEI
  • Structure Factors (659 Kb)
  • Retrieve 2HEI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HEI from S2C, [Save to disk]
  • Re-refined 2hei structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2HEI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HEI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2HEI, from MSDmotif at EBI
  • Fold representative 2hei from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hei_B] [2hei] [2hei_A]
  • SWISS-PROT database: [P61020]
  • Domain organization of [RAB5B_HUMAN] by SWISSPFAM
  • Domain found in 2HEI: [RAB ] by SMART
  • Other resources with information on 2HEI
  • Community annotation for 2HEI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science