2HEO	Immune System Dna	date	Jun 21, 2006
title	General Structure-Based Approach To The Design Of Protein Li Application To The Design Of Kv1.2 Potassium Channel Blocke
authors	C.Magis, S.Gasparini, J.B.Charbonnier, E.Stura, M.H.Le Du, A.Mene P.Cuniasse
compound		source
Molecule: 5'-D(Tpcpgpcpgpcpg)-3' Chain: B, E Engineered: Yes		Synthetic: Yes
Molecule: Z-Dna Binding Protein 1 Chain: A, D Fragment: N-Terminal Winged-Helix Domain Zalpha Synonym: Tumor Stroma And Activated Macrophage Protein Dlm- Engineered: Yes Mutation: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Gene: Zbp1 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21-De3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
symmetry	Space Group: P 61	R_factor 0.241 R_Free 0.305
crystal cell	length a length b length c angle alpha angle beta angle gamma 79.910 79.910 55.335 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.70 Å
Gene Ontology	Chain Function Process Component A, D
Primary reference	Structure-based secondary structure-independent approach to design protein ligands: Application to the design of Kv1.2 potassium channel blockers., Magis C, Gasparini D, Lecoq A, Le Du MH, Stura E, Charbonnier JB, Mourier G, Boulain JC, Pardo L, Caruana A, Joly A, Lefranc M, Masella M, Menez A, Cuniasse P, J Am Chem Soc. 2006 Dec 20;128(50):16190-205. PMID:17165772

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk] Biological Unit Coordinates (2heo.pdb1.gz) 28 Kb CSU: Contacts of Structural Units for 2HEO Likely Quarternary Molecular Structure file(s) for 2HEO Structure Factors (658 Kb) Retrieve 2HEO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2HEO from S2C, [Save to disk] Re-refined 2heo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2HEO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2HEO

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2HEO, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2heo_A] [2heo_D] [2heo_E] [2heo_B] [2heo] SWISS-PROT database: [Q9QY24] Domain organization of [ZBP1_MOUSE] by SWISSPFAM Domain found in 2HEO: [Zalpha ] by SMART

Other resources with information on 2HEO

Community annotation for 2HEO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---