2HEP Structural Genomics, Unknown Function date Jun 21, 2006
title Solution Nmr Structure Of The Upf0291 Protein Ynzc From Baci Subtilis. Northeast Structural Genomics Target Sr384.
authors J.M.Aramini, G.V.T.Swapna, C.K.Ho, K.Shetty, K.Cunningham, L.C.M J.Liu, M.Baran, T.B.Acton, B.Rost, G.T.Montelione, Northeast Str Genomics Consortium (Nesg)
compound source
Molecule: Upf0291 Protein Ynzc
Chain: A
Engineered: Yes
 Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Gene: Ynzc
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Mgk
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21, Sr384-21.4
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution NMR structure of the SOS response protein YnzC from Bacillus subtilis., Aramini JM, Sharma S, Huang YJ, Swapna GV, Ho CK, Shetty K, Cunningham K, Ma LC, Zhao L, Owens LA, Jiang M, Xiao R, Liu J, Baran MC, Acton TB, Rost B, Montelione GT, Proteins. 2008 Jul;72(1):526-30. PMID:18431750
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (234 Kb) [Save to disk]
  • Biological Unit Coordinates (2hep.pdb1.gz) 12 Kb
  • CSU: Contacts of Structural Units for 2HEP
  • Original NMR restraints for 2HEP from PDB
  • Retrieve 2HEP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HEP from S2C, [Save to disk]
    • View 2HEP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2HEP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HEP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hep_A] [2hep]
  • SWISS-PROT database: [O31818]
  • Domain organization of [YNZC_BACSU] by SWISSPFAM
    • Other resources with information on 2HEP
  • Community annotation for 2HEP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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