2HEV Cytokine date Jun 22, 2006
title Crystal Structure Of The Complex Between Ox40l And Ox40
authors S.G.Hymowitz, D.M.Compaan
compound source
Molecule: Tumor Necrosis Factor Ligand Superfamily Member 4
Chain: F
Fragment: Extracellular Domain (Residues 51-183)
Synonym: Ox40 Ligand, Ox40l, Glycoprotein Gp34, Tax Transcriptionally-Activated Glycoprotein 1, Cd252 Antigen;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tnfsf4, Txgp1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_strain: Hi5
Expression_system_vector_type: Plasmid

Molecule: Tumor Necrosis Factor Receptor Superfamily Member
Chain: R
Fragment: Extracellular Domain (Residues 29-170)
Synonym: Ox40l Receptor, Act35 Antigen, Tax Transcriptional Activated Glycoprotein 1 Receptor, Cd134 Antigen;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tnfrsf4, Txgp1l
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_strain: Hi5
Expression_system_vector_type: Plasmid
symmetry Space Group: H 3 2
R_factor 0.208 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
111.903 111.903 233.238 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.41 Å
ligand NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
F


R


Primary referenceThe Crystal Structure of the Costimulatory OX40-OX40L Complex., Compaan DM, Hymowitz SG, Structure. 2006 Aug;14(8):1321-30. PMID:16905106
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (2hev.pdb1.gz) 128 Kb
  • LPC: Ligand-Protein Contacts for 2HEV
  • CSU: Contacts of Structural Units for 2HEV
  • Likely Quarternary Molecular Structure file(s) for 2HEV
  • Structure Factors (313 Kb)
  • Retrieve 2HEV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HEV from S2C, [Save to disk]
  • Re-refined 2hev structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2HEV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HEV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2HEV, from MSDmotif at EBI
  • Fold representative 2hev from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hev_F] [2hev_R] [2hev]
  • SWISS-PROT database: [P23510] [P43489]
  • Domain organization of [TNFL4_HUMAN] [TNR4_HUMAN] by SWISSPFAM
  • Domains found in 2HEV: [TNF] [TNFR ] by SMART
  • Other resources with information on 2HEV
  • Community annotation for 2HEV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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