2HFG Immune System date Jun 23, 2006
title Crystal Structure Of Hbr3 Bound To Cb3s-Fab
authors S.G.Hymowitz
compound source
Molecule: Cb3s Fab Light Chain (Kappa)
Chain: L
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_cell_line: 4b8
Expression_system_vector_type: Plasmid
Other_details: Protein Selected By Phage Display

Molecule: Cb3s Fab Heavy Chain
Chain: H
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_cell_line: 4b8
Expression_system_vector_type: Plasmid
Other_details: Protein Selected By Phage Display

Molecule: Tumor Necrosis Factor Receptor Superfamily Member
Chain: R
Fragment: Cysteine Rich Domain (Residues 7-54)
Synonym: B Cell-Activating Factor Receptor, Baff Receptor, Blys Receptor 3, Cd268 Antigen;
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tnfrsf13c, Baffr, Br3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Origami (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-32a
symmetry Space Group: I 21 3
R_factor 0.195 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
146.408 146.408 146.408 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.61 Å
note 2HFG is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
R


Primary referenceSynthetic anti-BR3 antibodies that mimic BAFF binding and target both human and murine B cells., Lee CV, Hymowitz SG, Wallweber HJ, Gordon NC, Billeci KL, Tsai SP, Compaan DM, Yin J, Gong Q, Kelley RF, DeForge LE, Martin F, Starovasnik MA, Fuh G, Blood. 2006 Nov 1;108(9):3103-11. Epub 2006 Jul 13. PMID:16840730
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (2hfg.pdb1.gz) 72 Kb
  • CSU: Contacts of Structural Units for 2HFG
  • Likely Quarternary Molecular Structure file(s) for 2HFG
  • Structure Factors (229 Kb)
  • Retrieve 2HFG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HFG from S2C, [Save to disk]
  • Re-refined 2hfg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2HFG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HFG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2HFG, from MSDmotif at EBI
  • Fold representative 2hfg from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hfg_H] [2hfg_L] [2hfg] [2hfg_R]
  • SWISS-PROT database: [Q96RJ3]
  • Domain organization of [TR13C_HUMAN] by SWISSPFAM
  • Domains found in 2HFG: [IG_like] [IGv ] by SMART
  • Other resources with information on 2HFG
  • Community annotation for 2HFG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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