2HG0 Structure of the West Nile Virus envelope glycoprotein date
authors Nybakken, G.E., Nelson, C.A., Chen, B.R., Diamond, M.S., Fremont, D.H.
compound source
symmetry
R_factor
R_Free 0.307
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.00
ligand FUL, NAG, NDG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the West Nile virus envelope glycoprotein., Nybakken GE, Nelson CA, Chen BR, Diamond MS, Fremont DH, J Virol. 2006 Sep 20;. PMID:16987985
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (2hg0.pdb1.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 2HG0
  • CSU: Contacts of Structural Units for 2HG0
  • Likely Quarternary Molecular Structure file(s) for 2HG0
  • Structure Factors (179 Kb)
  • Retrieve 2HG0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HG0 from S2C, [Save to disk]
  • Re-refined 2hg0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2HG0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HG0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HG0, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hg0_A] [2hg0]
  • SWISS-PROT database: [Q3I0Y8]
  • Domain organization of [Q3I0Y8_WNV] by SWISSPFAM
  • Other resources with information on 2HG0
  • Community annotation for 2HG0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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