2HGF Hepatocyte Growth Factor date Dec 18, 1997
title Hairpin Loop Containing Domain Of Hepatocyte Growth Factor, Minimized Average Structure
authors H.Zhou, M.J.Mazzulla, J.D.Kaufman, S.J.Stahl, P.T.Wingfield, J.S. D.P.Bottaro, R.A.Byrd
compound source
Molecule: Hepatocyte Growth Factor
Chain: A
Fragment: Amino Terminal Domain
Synonym: Hgfn
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
related structures by homologous chain: 1GMO
Primary referenceThe solution structure of the N-terminal domain of hepatocyte growth factor reveals a potential heparin-binding site., Zhou H, Mazzulla MJ, Kaufman JD, Stahl SJ, Wingfield PT, Rubin JS, Bottaro DP, Byrd RA, Structure 1998 Jan 15;6(1):109-16. PMID:9493272
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (2hgf.pdb1.gz) 31 Kb
  • CSU: Contacts of Structural Units for 2HGF
  • Retrieve 2HGF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HGF from S2C, [Save to disk]
    • View 2HGF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2HGF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HGF, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2hgf__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hgf_A] [2hgf]
  • SWISS-PROT database: [P14210]
  • Domain organization of [HGF_HUMAN] by SWISSPFAM
  • Domain found in 2HGF: [PAN_AP ] by SMART
    • Other resources with information on 2HGF
  • Community annotation for 2HGF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 2HGF from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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