2HGM Rna Binding Protein date Jun 27, 2006
title Nmr Structure Of The Second Qrrm Domain Of Human Hnrnp F
authors C.Dominguez, F.H.T.Allain
compound source
Molecule: Heterogeneous Nuclear Ribonucleoprotein F
Chain: A
Fragment: Quasi Rna Recognition Motif 2 (Qrrm2)
Synonym: Hnrpf Protein
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hnrpf
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Codon Plus
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28b(+)
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNMR structure of the three quasi RNA recognition motifs (qRRMs) of human hnRNP F and interaction studies with Bcl-x G-tract RNA: a novel mode of RNA recognition., Dominguez C, Allain FH, Nucleic Acids Res. 2006 Aug 2;34(13):3634-45. Print 2006. PMID:16885237
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (362 Kb) [Save to disk]
  • Biological Unit Coordinates (2hgm.pdb1.gz) 24 Kb
  • CSU: Contacts of Structural Units for 2HGM
  • Original NMR restraints for 2HGM from PDB
  • Retrieve 2HGM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HGM from S2C, [Save to disk]
    • View 2HGM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2HGM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HGM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hgm] [2hgm_A]
  • SWISS-PROT database: [P52597]
  • Domain organization of [HNRPF_HUMAN] by SWISSPFAM
  • Domain found in 2HGM: [RRM ] by SMART
    • Other resources with information on 2HGM
  • Community annotation for 2HGM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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