2HH3 Rna Binding Protein date Jun 27, 2006
title Solution Structure Of The Third Kh Domain Of Ksrp
authors M.F.Garcia-Mayoral
compound source
Molecule: Kh-Type Splicing Regulatory Protein
Chain: A
Fragment: Third Kh Domain (Residues 142-212)
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
note 2HH3 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe structure of the C-terminal KH domains of KSRP reveals a noncanonical motif important for mRNA degradation., Garcia-Mayoral MF, Hollingworth D, Masino L, Diaz-Moreno I, Kelly G, Gherzi R, Chou CF, Chen CY, Ramos A, Structure. 2007 Apr;15(4):485-98. PMID:17437720
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (368 Kb) [Save to disk]
  • Biological Unit Coordinates (2hh3.pdb1.gz) 18 Kb
  • CSU: Contacts of Structural Units for 2HH3
  • Retrieve 2HH3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HH3 from S2C, [Save to disk]
  • View 2HH3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HH3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HH3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hh3] [2hh3_A]
  • SWISS-PROT database: [Q92945]
  • Domain organization of [FUBP2_HUMAN] by SWISSPFAM
  • Domain found in 2HH3: [KH ] by SMART
  • Other resources with information on 2HH3
  • Community annotation for 2HH3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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