2HJW Ligase date Jul 02, 2006
title Crystal Structure Of The Bc Domain Of Acc2
authors Y.S.Cho, J.I.Lee, D.Shin, H.T.Kim, T.G.Lee, Y.S.Heo
compound source
Molecule: Acetyl-Coa Carboxylase 2
Chain: A
Fragment: Bc Domain, Residues 217-775
Synonym: Acc2
Ec: 6.4.1.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Acacb
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Modified Pet21b
symmetry Space Group: P 32 2 1
R_factor 0.212 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.797 75.797 189.006 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand
enzyme Ligase E.C.6.4.1.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the biotin carboxylase domain of human acetyl-CoA carboxylase 2., Cho YS, Lee JI, Shin D, Kim HT, Cheon YH, Seo CI, Kim YE, Hyun YL, Lee YS, Sugiyama K, Park SY, Ro S, Cho JM, Lee TG, Heo YS, Proteins. 2008 Jan 1;70(1):268-72. PMID:17876819
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (2hjw.pdb1.gz) 79 Kb
  • CSU: Contacts of Structural Units for 2HJW
  • Likely Quarternary Molecular Structure file(s) for 2HJW
  • Structure Factors (146 Kb)
  • Retrieve 2HJW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HJW from S2C, [Save to disk]
  • Re-refined 2hjw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2HJW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HJW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HJW, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hjw] [2hjw_A]
  • SWISS-PROT database: [O00763]
  • Domain organization of [ACACB_HUMAN] by SWISSPFAM
  • Domain found in 2HJW: [Biotin_carb_C ] by SMART
  • Other resources with information on 2HJW
  • Community annotation for 2HJW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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