2HK6 Lyase date Jul 03, 2006
title Crystal Structure Of B. Subtilis Ferrochelatase With Iron Bo Active Site
authors S.Al-Karadaghi, T.Karlberg
compound source
Molecule: Ferrochelatase
Chain: A
Synonym: Protoheme Ferro-Lyase, Heme Synthetase
Ec: 4.99.1.1
Engineered: Yes
Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Gene: Hemh, Hemf
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector: Plasmid
Expression_system_plasmid: Plugt7-H
symmetry Space Group: P 21 21 21
R_factor 0.176 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.650 49.980 118.850 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.71 Å
ligand FE, MG enzyme Lyase E.C.4.99.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAmino Acid Residues His183 and Glu264 in Bacillus subtilis Ferrochelatase Direct and Facilitate the Insertion of Metal Ion into Protoporphyrin IX(,)., Hansson MD, Karlberg T, Rahardja MA, Al-Karadaghi S, Hansson M, Biochemistry. 2007 Jan 9;46(1):87-94. PMID:17198378
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (2hk6.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 2HK6
  • CSU: Contacts of Structural Units for 2HK6
  • Likely Quarternary Molecular Structure file(s) for 2HK6
  • Structure Factors (353 Kb)
  • Retrieve 2HK6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HK6 from S2C, [Save to disk]
  • Re-refined 2hk6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2HK6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HK6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HK6, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hk6_A] [2hk6]
  • SWISS-PROT database: [P32396]
  • Domain organization of [HEMH_BACSU] by SWISSPFAM
  • Other resources with information on 2HK6
  • Community annotation for 2HK6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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