2HLE Transferase Transferase Receptor date Jul 06, 2006
title Structural And Biophysical Characterization Of The Ephb4-Eph Protein Protein Interaction And Receptor Specificity.
authors J.E.Chrencik, A.Brooun, P.Kuhn, Accelerated Technologies Center To 3d Structure (Atcg3d)
compound source
Molecule: Ephrin Type-B Receptor 4
Chain: A
Fragment: Ligand Binding Domain
Synonym: Tyrosine-Protein Kinase Receptor Htk, Ephb4
Ec: 2.7.10.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hi5
Gene: Ephb4, Htk
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_vector: Pfastbac1

Molecule: Ephrin-B2
Chain: B
Fragment: Extracellular Domain
Synonym: Eph-Related Receptor Tyrosine Kinase Ligand 5, Ler Ligand, Htk-L, Ephrinb2;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hi5
Gene: Efnb2, Eplg5, Htkl, Lerk5
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_vector: Pfastbac1
symmetry Space Group: P 41
R_factor 0.226 R_Free 0.295
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.085 81.085 50.945 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand
enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructural and biophysical characterization of the EPHB4-EPHRINB2 protein protein interaction and receptor specificity., Chrencik JE, Brooun A, Kraus ML, Recht MI, Kolatkar AR, Han GW, Seifert JM, Widmer H, Auer M, Kuhn P, J Biol Chem. 2006 Jul 25;. PMID:16867992
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (2hle.pdb1.gz) 53 Kb
  • CSU: Contacts of Structural Units for 2HLE
  • Likely Quarternary Molecular Structure file(s) for 2HLE
  • Structure Factors (295 Kb)
  • Retrieve 2HLE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HLE from S2C, [Save to disk]
  • Re-refined 2hle structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2HLE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HLE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2HLE, from MSDmotif at EBI
  • Fold representative 2hle from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hle] [2hle_B] [2hle_A]
  • SWISS-PROT database: [P52799] [P54760]
  • Domain organization of [EFNB2_HUMAN] [EPHB4_HUMAN] by SWISSPFAM
  • Domain found in 2HLE: [EPH_lbd ] by SMART
  • Other resources with information on 2HLE
  • Community annotation for 2HLE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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