2HOF Recombination Dna date Jul 14, 2006
title Crystal Structure Of The Pre-Cleavage Synaptic Complex In Th Site-Specific Recombination
authors K.Ghosh, G.D.Van Duyne
compound source
Molecule: Loxp Dna
Chain: C
Engineered: Yes
Synthetic: Yes

Molecule: Loxp Dna
Chain: D
Engineered: Yes

Synthetic: Yes

Molecule: Recombinase Cre
Chain: A, B
Engineered: Yes
Mutation: Yes

Organism_scientific: Enterobacteria Phage P1
Organism_taxid: 10678
Gene: Cre
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: C 2 2 21
R_factor 0.209 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
107.625 122.130 178.748 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceSynapsis of loxP sites by Cre recombinase., Ghosh K, Guo F, Van Duyne GD, J Biol Chem. 2007 Aug 17;282(33):24004-16. Epub 2007 Jun 15. PMID:17573343
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (143 Kb) [Save to disk]
  • Biological Unit Coordinates (2hof.pdb1.gz) 268 Kb
  • CSU: Contacts of Structural Units for 2HOF
  • Likely Quarternary Molecular Structure file(s) for 2HOF
  • Structure Factors (709 Kb)
  • Retrieve 2HOF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HOF from S2C, [Save to disk]
  • Re-refined 2hof structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2HOF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HOF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2HOF, from MSDmotif at EBI
  • Fold representative 2hof from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hof] [2hof_D] [2hof_B] [2hof_A] [2hof_C]
  • SWISS-PROT database: [P06956]
  • Domain organization of [RECR_BPP1] by SWISSPFAM
  • Other resources with information on 2HOF
  • Community annotation for 2HOF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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