2HOI Recombination Dna date Jul 14, 2006
title Crystal Structure Of The Tetrameric Pre-Cleavage Synaptic Co The Cre-Loxp Site-Specific Recombination
authors K.Ghosh, G.D.Van Duyne
compound source
Molecule: Loxp Dna
Chain: C, E
Engineered: Yes
Synthetic: Yes

Molecule: Loxp Dna
Chain: D, F
Engineered: Yes

Synthetic: Yes

Molecule: Recombinase Cre
Chain: A, B, G, H
Engineered: Yes
Mutation: Yes

Organism_scientific: Enterobacteria Phage P1
Organism_taxid: 10678
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 32 2 1
R_factor 0.184 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
136.784 136.784 218.275 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.60 Å
Gene
Ontology
ChainFunctionProcessComponent
H, A, G, B


Primary referenceSynapsis of loxP sites by Cre recombinase., Ghosh K, Guo F, Van Duyne GD, J Biol Chem. 2007 Aug 17;282(33):24004-16. Epub 2007 Jun 15. PMID:17573343
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (279 Kb) [Save to disk]
  • Biological Unit Coordinates (2hoi.pdb1.gz) 269 Kb
  • CSU: Contacts of Structural Units for 2HOI
  • Likely Quarternary Molecular Structure file(s) for 2HOI
  • Structure Factors (1079 Kb)
  • Retrieve 2HOI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HOI from S2C, [Save to disk]
  • Re-refined 2hoi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2HOI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HOI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2HOI, from MSDmotif at EBI
  • Fold representative 2hoi from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hoi_C] [2hoi_G] [2hoi_B] [2hoi_F] [2hoi_A] [2hoi_E] [2hoi_H] [2hoi_D] [2hoi]
  • SWISS-PROT database: [P06956]
  • Domain organization of [RECR_BPP1] by SWISSPFAM
  • Other resources with information on 2HOI
  • Community annotation for 2HOI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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