2HPC Blood Clotting date Jul 17, 2006
title Crystal Structure Of Fragment D From Human Fibrinogen Comple Gly-Pro-Arg-Pro-Amide.
authors R.F.Doolittle, J.M.Kollman, A.Chen, L.Pandi
compound source
Molecule: Fibrinogen Alpha Chain
Chain: A, D, G, J
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Fibrinogen Beta Chain
Chain: B, E, H, K

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Fibrinogen, Gamma Polypeptide
Chain: C, F, I, L

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Gly-Pro-Arg-Pro-Amide Peptide Ligand
Chain: M, N, O, P, Q, R, S, T
Engineered: Yes

Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized.
symmetry Space Group: P 1 2 1
R_factor 0.275 R_Free 0.360
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.677 46.069 429.901 90.00 89.99 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand CA, NAG, NDG, NH2 enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (461 Kb) [Save to disk]
  • Biological Unit Coordinates (2hpc.pdb1.gz) 119 Kb
  • Biological Unit Coordinates (2hpc.pdb2.gz) 118 Kb
  • Biological Unit Coordinates (2hpc.pdb3.gz) 119 Kb
  • Biological Unit Coordinates (2hpc.pdb4.gz) 119 Kb
  • LPC: Ligand-Protein Contacts for 2HPC
  • CSU: Contacts of Structural Units for 2HPC
  • Likely Quarternary Molecular Structure file(s) for 2HPC
  • Structure Factors (1032 Kb)
  • Retrieve 2HPC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HPC from S2C, [Save to disk]
  • Re-refined 2hpc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2HPC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HPC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2HPC, from MSDmotif at EBI
  • Fold representative 2hpc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hpc_M] [2hpc_Q] [2hpc_L] [2hpc_K] [2hpc_A] [2hpc_T] [2hpc_S] [2hpc_J] [2hpc_G] [2hpc] [2hpc_D] [2hpc_E] [2hpc_R] [2hpc_H] [2hpc_N] [2hpc_B] [2hpc_F] [2hpc_I] [2hpc_O] [2hpc_C] [2hpc_P]
  • SWISS-PROT database: [P02671] [P02675] [P02679]
  • Domain organization of [FIBA_HUMAN] [FIBB_HUMAN] [FIBG_HUMAN] by SWISSPFAM
  • Domain found in 2HPC: [FBG ] by SMART
  • Other resources with information on 2HPC
  • Community annotation for 2HPC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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