2HQH Structural Protein, Protein Binding date Jul 18, 2006
title Crystal Structure Of P150glued And Clip-170
authors I.Hayashi, M.Ikura
compound source
Molecule: Dynactin-1
Chain: A, B, C, D
Fragment: Cap-Gly Domain, Residues 15-107
Synonym: 150 Kda Dynein-Associated Polypeptide, Dp-150, Dap P150-Glued, P135;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dctn1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b

Molecule: Restin
Chain: E, F, G, H
Fragment: Second Zinc Finger Domain, Residues 1405-1427
Synonym: Cytoplasmic Linker Protein 170 Alpha-2, Clip-170, Sternberg Intermediate Filament-Associated Protein, Cytopla Linker Protein 1;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rsn, Cyln1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t1
symmetry Space Group: P 42 21 2
R_factor 0.194 R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
122.800 122.800 68.400 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B, C, D


F, E, H, G


Primary referenceCLIP170 autoinhibition mimics intermolecular interactions with p150Glued or EB1., Hayashi I, Plevin MJ, Ikura M, Nat Struct Mol Biol. 2007 Oct;14(10):980-1. Epub 2007 Sep 9. PMID:17828275
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (2hqh.pdb1.gz) 19 Kb
  • Biological Unit Coordinates (2hqh.pdb2.gz) 18 Kb
  • Biological Unit Coordinates (2hqh.pdb3.gz) 19 Kb
  • Biological Unit Coordinates (2hqh.pdb4.gz) 19 Kb
  • Biological Unit Coordinates (2hqh.pdb5.gz) 138 Kb
  • LPC: Ligand-Protein Contacts for 2HQH
  • CSU: Contacts of Structural Units for 2HQH
  • Likely Quarternary Molecular Structure file(s) for 2HQH
  • Structure Factors (335 Kb)
  • Retrieve 2HQH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HQH from S2C, [Save to disk]
  • Re-refined 2hqh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2HQH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HQH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2HQH, from MSDmotif at EBI
  • Fold representative 2hqh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hqh_H] [2hqh_D] [2hqh_E] [2hqh_C] [2hqh_A] [2hqh] [2hqh_G] [2hqh_B] [2hqh_F]
  • SWISS-PROT database: [P30622] [Q14203]
  • Domain organization of [CLIP1_HUMAN] [DCTN1_HUMAN] by SWISSPFAM
  • Domains found in 2HQH: [CAP_GLY] [ZnF_C2HC ] by SMART
  • Other resources with information on 2HQH
  • Community annotation for 2HQH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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