2HQJ Isomerase date Jul 18, 2006
title Cyclophilin From Leishmania Major
authors T.L.Arakaki, E.A.Merritt, Structural Genomics Of Pathogenic Pr Consortium (Sgpp)
compound source
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase
Chain: A
Fragment: Unp Residues 22-198
Synonym: Ppiase
Ec: 5.2.1.8
Engineered: Yes
 Organism_scientific: Leishmania Major
Organism_taxid: 5664
Gene: Cyp11, Lmjf_23_0050
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Eq7351b
Expression_system_vector_type: Ava421
Expression_system_plasmid: Pet14b
symmetry Space Group: P 21 21 21
R_factor 0.191 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.865 63.511 66.295 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand PO4 enzyme Isomerase E.C.5.2.1.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (2hqj.pdb1.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 2HQJ
  • CSU: Contacts of Structural Units for 2HQJ
  • Structure Factors (281 Kb)
  • Retrieve 2HQJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HQJ from S2C, [Save to disk]
  • Re-refined 2hqj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2HQJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2HQJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HQJ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hqj_A] [2hqj]
  • SWISS-PROT database: [Q4QBH1]
  • Domain organization of [Q4QBH1_LEIMA] by SWISSPFAM
    • Other resources with information on 2HQJ
  • Community annotation for 2HQJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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