2HRD	Transferase	date	Jul 20, 2006
title	Crystal Structure Of The Uridine Phosphorylase From Salmonel Typhimurium In Complex With Thymine And Phosphate Ion At 1. Resolution
authors	V.I.Timofeev, A.G.Gabdulkhakov, A.M.Mikhailov
compound		source
Molecule: Uridine Phosphorylase Chain: A, B, C, D, E, F Synonym: Urdpase, Upase Ec: 2.4.2.3 Engineered: Yes		Organism_scientific: Salmonella Typhimurium Organism_taxid: 99287 Strain: Lt2 Gene: Udp Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21 De3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pbluescript Iisk
symmetry	Space Group: P 21 21 21	R_factor 0.166 R_Free 0.189
crystal cell	length a length b length c angle alpha angle beta angle gamma 88.200 123.400 133.200 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	1PE, GOL, PO4, TDR	enzyme	Transferase E.C.2.4.2.3 BRENDA
Gene Ontology	Chain Function Process Component F, A, D, C, E, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (466 Kb) [Save to disk] Biological Unit Coordinates (2hrd.pdb1.gz) 460 Kb LPC: Ligand-Protein Contacts for 2HRD CSU: Contacts of Structural Units for 2HRD Likely Quarternary Molecular Structure file(s) for 2HRD Structure Factors (1262 Kb) Retrieve 2HRD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2HRD from S2C, [Save to disk] Re-refined 2hrd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2HRD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2HRD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2HRD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2hrd_D] [2hrd] [2hrd_A] [2hrd_F] [2hrd_E] [2hrd_B] [2hrd_C] SWISS-PROT database: [P0A1F6] Domain organization of [UDP_SALTY] by SWISSPFAM

Other resources with information on 2HRD

Community annotation for 2HRD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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