2HT0 Transcription Dna date Jul 24, 2006
title Ihf Bound To Doubly Nicked Dna
authors K.K.Swinger, P.A.Rice
compound source
Molecule: 5'-D(Cpgpgptpgpcpapapcpapapapt)-3'
Chain: C
Engineered: Yes
Synthetic: Yes

Molecule: 5'-D(Tpgpaptpapapgpcpapaptpgpcptpt Tpgpgpc)-3';
Chain: D
Engineered: Yes

Synthetic: Yes

Molecule: 5'-D(Gpgpcpcpapapapapapapgpcpaptpt
Chain: E
Engineered: Yes

Synthetic: Yes

Molecule: 5'-D(Gpcptptpaptpcpapaptptptpgptpt Cpc)-3';
Chain: F
Engineered: Yes

Synthetic: Yes

Molecule: Integration Host Factor Alpha-Subunit
Chain: A
Synonym: Ihf-Alpha

Organism_scientific: Escherichia Coli
Organism_taxid: 562

Molecule: Integration Host Factor Beta-Subunit
Chain: B
Synonym: Ihf-Beta

Organism_scientific: Escherichia Coli
Organism_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.235 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.942 58.944 181.676 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand CD enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • bacterial-type RNA polymeras...


  • B


    Primary referenceStructure-based Analysis of HU-DNA Binding., Swinger KK, Rice PA, J Mol Biol. 2006 Nov 9;. PMID:17097674
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (2ht0.pdb1.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 2HT0
  • CSU: Contacts of Structural Units for 2HT0
  • Likely Quarternary Molecular Structure file(s) for 2HT0
  • Structure Factors (241 Kb)
  • Retrieve 2HT0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HT0 from S2C, [Save to disk]
  • Re-refined 2ht0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2HT0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HT0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HT0, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ht0] [2ht0_D] [2ht0_C] [2ht0_B] [2ht0_F] [2ht0_E] [2ht0_A]
  • SWISS-PROT database: [P0A6X7] [P0A6Y1]
  • Domain organization of [IHFA_ECOLI] [IHFB_ECOLI] by SWISSPFAM
  • Domain found in 2HT0: [BHL ] by SMART
  • Other resources with information on 2HT0
  • Community annotation for 2HT0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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