2HU2 Oxidoreductase date Jul 26, 2006
title Ctbpbars In Ternary Complex With Nad(H) And Rrtgappal Peptide
authors M.Nardini, M.Bolognesi, K.G.R.Quinlan, A.Verger, P.Francescato, M.Crossley
compound source
Molecule: C-Terminal-Binding Protein 1
Chain: A
Fragment: Residues 1-350
Synonym: Ctbp1, C-Terminal-Binding Protein 3, Ctbp3, 50 Kda Bfa-Dependent Adp-Ribosylation Substrate, Bars-50;
Ec: 1.1.1.-
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Organ: Brain
Gene: Ctbp1, Bars, Ctbp3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11d-His

Molecule: 9-Mer Peptide From Zinc Finger Protein 217
Chain: B
Fragment: Residues 1-9
Engineered: Yes
Mutation: Yes

Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Human (With C5a)
symmetry Space Group: P 64 2 2
R_factor 0.227 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.310 89.310 162.720 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.85 Å
ligand FMT, NAD enzyme Oxidoreductase E.C.1.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSpecific Recognition of ZNF217 and Other Zinc Finger Proteins at a Surface Groove of C-Terminal Binding Proteins., Quinlan KG, Nardini M, Verger A, Francescato P, Yaswen P, Corda D, Bolognesi M, Crossley M, Mol Cell Biol. 2006 Nov;26(21):8159-72. Epub 2006 Aug 28. PMID:16940172
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (2hu2.pdb1.gz) 107 Kb
  • LPC: Ligand-Protein Contacts for 2HU2
  • CSU: Contacts of Structural Units for 2HU2
  • Likely Quarternary Molecular Structure file(s) for 2HU2
  • Structure Factors (143 Kb)
  • Retrieve 2HU2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HU2 from S2C, [Save to disk]
  • Re-refined 2hu2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2HU2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HU2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2HU2, from MSDmotif at EBI
  • Fold representative 2hu2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hu2_B] [2hu2_A] [2hu2]
  • SWISS-PROT database: [Q9Z2F5] [O75362]
  • Domain organization of [CTBP1_RAT] [ZN217_HUMAN] by SWISSPFAM
  • Other resources with information on 2HU2
  • Community annotation for 2HU2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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