2HVE Signaling Protein,Transferase date Jul 28, 2006
title S120g Mutant Of Human Nucleoside Diphosphate Kinase A Comple Adp
authors M.F.Giraud, F.Georgescauld, I.Lascu, A.Dautant
compound source
Molecule: Nucleoside Diphosphate Kinase A
Chain: A, B, C
Synonym: Ndk A; Ndp Kinase A; Tumor Metastatic Process-Asso Protein; Metastasis Inhibition Factor Nm23; Nm23-H1; Granzy Activated Dnase; Gaad;
Ec: 2.7.4.6
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nme1, Ndpka, Nm23
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-21
symmetry Space Group: P 41 21 2
R_factor 0.218 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
114.824 114.824 89.719 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand ADP enzyme Transferase E.C.2.7.4.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B
  • deoxyribonuclease activity


  • Primary referenceCrystal Structures of S120G Mutant and Wild Type of Human Nucleoside Diphosphate Kinase A in Complex with ADP., Giraud MF, Georgescauld F, Lascu I, Dautant A, J Bioenerg Biomembr. 2006 Sep 1;. PMID:16944299
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (2hve.pdb1.gz) 151 Kb
  • LPC: Ligand-Protein Contacts for 2HVE
  • CSU: Contacts of Structural Units for 2HVE
  • Likely Quarternary Molecular Structure file(s) for 2HVE
  • Structure Factors (181 Kb)
  • Retrieve 2HVE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HVE from S2C, [Save to disk]
  • Re-refined 2hve structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2HVE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HVE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HVE, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hve] [2hve_C] [2hve_B] [2hve_A]
  • SWISS-PROT database: [P15531]
  • Domain organization of [NDKA_HUMAN] by SWISSPFAM
  • Domain found in 2HVE: [NDK ] by SMART
  • Other resources with information on 2HVE
  • Community annotation for 2HVE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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