2HWY Rna Binding Protein date Aug 02, 2006
title Structure Of Pin Domain Of Human Smg5.
authors F.Glavan, I.Behm-Ansmant, E.Izaurralde, E.Conti
compound source
Molecule: Protein Smg5
Chain: A, B
Fragment: Pinc Domain
Synonym: Smg-5 Homolog, Est1-Like Protein B, Lpts-Interacti Protein, Lpts-Rp1;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Smg5
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgexcs
symmetry Space Group: P 1 21 1
R_factor 0.271 R_Free 0.329
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.591 42.534 65.103 90.00 95.98 90.00
method X-Ray Diffractionresolution 2.75 Å
note 2HWY is a representative structure
Primary referenceStructures of the PIN domains of SMG6 and SMG5 reveal a nuclease within the mRNA surveillance complex., Glavan F, Behm-Ansmant I, Izaurralde E, Conti E, EMBO J. 2006 Nov 1;25(21):5117-25. Epub 2006 Oct 19. PMID:17053788
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (2hwy.pdb1.gz) 18 Kb
  • Biological Unit Coordinates (2hwy.pdb2.gz) 18 Kb
  • CSU: Contacts of Structural Units for 2HWY
  • Likely Quarternary Molecular Structure file(s) for 2HWY
  • Structure Factors (98 Kb)
  • Retrieve 2HWY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HWY from S2C, [Save to disk]
  • Re-refined 2hwy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2HWY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2HWY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HWY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hwy] [2hwy_A] [2hwy_B]
  • SWISS-PROT database: [Q9UPR3]
  • Domain organization of [SMG5_HUMAN] by SWISSPFAM
  • Domain found in 2HWY: [PINc ] by SMART
    • Other resources with information on 2HWY
  • Community annotation for 2HWY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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