2HZ5 Transport Protein date Aug 08, 2006
title Crystal Structure Of Human Dynein Light Chain Dnlc2a
authors J.F.Liu, Z.X.Wang, X.Q.Wang, Q.Tang, X.M.An, L.L.Gui, D.C.Li
compound source
Molecule: Dynein Light Chain 2a, Cytoplasmic
Chain: A, B
Synonym: Dynein-Associated Protein Km23, Bithoraxoid-Like P Blp;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dnlc2a
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: M15
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe30
symmetry Space Group: P 61
R_factor 0.203 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.150 83.150 98.128 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand CS enzyme
note 2HZ5 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of human dynein light chain Dnlc2A: structural insights into the interaction with IC74., Liu JF, Wang ZX, Wang XQ, Tang Q, An XM, Gui LL, Liang DC, Biochem Biophys Res Commun. 2006 Oct 27;349(3):1125-9. Epub 2006 Sep 5. PMID:16970917
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (2hz5.pdb1.gz) 32 Kb
  • Biological Unit Coordinates (2hz5.pdb2.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 2HZ5
  • CSU: Contacts of Structural Units for 2HZ5
  • Likely Quarternary Molecular Structure file(s) for 2HZ5
  • Structure Factors (361 Kb)
  • Retrieve 2HZ5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HZ5 from S2C, [Save to disk]
  • Re-refined 2hz5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2HZ5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HZ5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2HZ5, from MSDmotif at EBI
  • Fold representative 2hz5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hz5_B] [2hz5] [2hz5_A]
  • SWISS-PROT database: [Q9NP97]
  • Domain organization of [DLRB1_HUMAN] by SWISSPFAM
  • Domain found in 2HZ5: [Robl_LC7 ] by SMART
  • Other resources with information on 2HZ5
  • Community annotation for 2HZ5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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