2HZD Gene Regulation date Aug 08, 2006
title Nmr Structure Of The Dna-Binding Tea Domain And Insights Into Tef-1 Function
authors A.Anbanandam, S.Veeraraghavan
compound source
Molecule: Transcriptional Enhancer Factor Tef-1
Chain: A
Fragment: N-Terminal Tea Domain
Synonym: Tea Domain Family Member 1, Tead-1, Protein Gt- Iic, Transcription Factor 13, Ntef-1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tead1, Tcf13, Tef1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21d
methodSolution NMR
note 2HZD is a representative structure

Primary referenceInsights into transcription enhancer factor 1 (TEF-1) activity from the solution structure of the TEA domain., Anbanandam A, Albarado DC, Nguyen CT, Halder G, Gao X, Veeraraghavan S, Proc Natl Acad Sci U S A. 2006 Nov 14;103(46):17225-30. Epub 2006 Nov 3. PMID:17085591
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (571 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2HZD
  • Original NMR restraints for 2HZD from PDB
  • Retrieve 2HZD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HZD from S2C, [Save to disk]
  • View 2HZD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HZD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2HZD, from MSDmotif at EBI
  • Fold representative 2hzd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hzd] [2hzd_A]
  • SWISS-PROT database: [P28347]
  • Domain organization of [TEAD1_HUMAN] by SWISSPFAM
  • Domain found in 2HZD: [TEA ] by SMART
  • Other resources with information on 2HZD
  • Community annotation for 2HZD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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