2I0G Transcription date Aug 10, 2006
title Benzopyrans Are Selective Estrogen Receptor Beta Agonists (Serbas) With Novel Activity In Models Of Benign Prostatic Hyperplasia
authors Y.Wang
compound source
Molecule: Estrogen Receptor Beta
Chain: A, B
Synonym: Er-Beta
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Esr2, Estrb, Nr3a2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-30
symmetry Space Group: P 61
R_factor 0.233 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.196 63.196 249.255 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand I0G BindingDB enzyme
Primary referenceBenzopyrans are selective estrogen receptor Beta agonists with novel activity in models of benign prostatic hyperplasia., Norman BH, Dodge JA, Richardson TI, Borromeo PS, Lugar CW, Jones SA, Chen K, Wang Y, Durst GL, Barr RJ, Montrose-Rafizadeh C, Osborne HE, Amos RM, Guo S, Boodhoo A, Krishnan V, J Med Chem. 2006 Oct 19;49(21):6155-7. PMID:17034120
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk]
  • Biological Unit Coordinates (2i0g.pdb1.gz) 72 Kb
  • LPC: Ligand-Protein Contacts for 2I0G
  • CSU: Contacts of Structural Units for 2I0G
  • Likely Quarternary Molecular Structure file(s) for 2I0G
  • Structure Factors (156 Kb)
  • Retrieve 2I0G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2I0G from S2C, [Save to disk]
  • Re-refined 2i0g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2I0G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2I0G
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2I0G, from MSDmotif at EBI
  • Fold representative 2i0g from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2i0g_A] [2i0g] [2i0g_B]
  • SWISS-PROT database: [Q92731]
  • Domain organization of [ESR2_HUMAN] by SWISSPFAM
  • Domain found in 2I0G: [HOLI ] by SMART
  • Other resources with information on 2I0G
  • Community annotation for 2I0G at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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