2I13 Dna Binding Protein Dna date Aug 12, 2006
title Aart, A Six Finger Zinc Finger Designed To Recognize Ann Tri
authors N.C.Horton, D.J.Segal, M.Bhakta, J.W.Crotty, C.F.Barbas Iii
compound source
Molecule: 5'-D(Cpapgpaptpgptpapgpgpgpapapapa Cpgpgpg)-3';
Chain: C, E
Engineered: Yes
Synthetic: Yes
Other_details: Solid Phase Synthesis By Phosphoramidite Che

Molecule: 5'-D(Gpcpcpcpgpgpgpcptptptptpcpcpc Aptpcpt)-3';
Chain: D, F
Engineered: Yes

Synthetic: Yes
Other_details: Solid Phase Synthesis By Phosphoramidite Che

Molecule: Aart
Chain: A, B
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmal Fusion
symmetry Space Group: P 1
R_factor 0.203 R_Free 0.249
length a length b length c angle alpha angle beta angle gamma
41.586 72.054 74.212 75.53 83.80 72.67
method X-Ray Diffractionresolution 1.96 Å
ligand GOL, ZN enzyme
Primary referenceStructure of Aart, a Designed Six-finger Zinc Finger Peptide, Bound to DNA., Segal DJ, Crotty JW, Bhakta MS, Barbas CF 3rd, Horton NC, J Mol Biol. 2006 Oct 20;363(2):405-21. Epub 2006 Aug 11. PMID:16963084
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (2i13.pdb1.gz) 49 Kb
  • Biological Unit Coordinates (2i13.pdb2.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 2I13
  • CSU: Contacts of Structural Units for 2I13
  • Likely Quarternary Molecular Structure file(s) for 2I13
  • Structure Factors (391 Kb)
  • Retrieve 2I13 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2I13 from S2C, [Save to disk]
  • Re-refined 2i13 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2I13 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2I13
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2I13, from MSDmotif at EBI
  • Fold representative 2i13 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2i13_D] [2i13] [2i13_A] [2i13_E] [2i13_B] [2i13_F] [2i13_C]
  • SWISS-PROT database: [Q07230]
  • Domain organization of [ZSCA2_MOUSE] by SWISSPFAM
  • Domain found in 2I13: [ZnF_C2H2 ] by SMART
  • Other resources with information on 2I13
  • Community annotation for 2I13 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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