2I1M Transferase date Aug 14, 2006
title Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An Arylamide Inhibitor
authors C.Schubert, C.Schalk-Hihi
compound source
Molecule: Macrophage Colony-Stimulating Factor 1 Receptor
Chain: A
Fragment: Kinase Domain
Synonym: Cfms Receptor Tyrosine Kinase, Csf-1-R, Fms Proto- Oncogene, C-Fms, Cd115 Antigen;
Ec: 2.7.10.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Csf1r
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: H 3
R_factor 0.237 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.440 80.440 143.760 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand 5CN enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the tyrosine kinase domain of colony-stimulating factor-1 receptor (cFMS) in complex with two inhibitors., Schubert C, Schalk-Hihi C, Struble GT, Ma HC, Petrounia IP, Brandt B, Deckman IC, Patch RJ, Player MR, Spurlino JC, Springer BA, J Biol Chem. 2006 Nov 28;. PMID:17132624
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (2i1m.pdb1.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 2I1M
  • CSU: Contacts of Structural Units for 2I1M
  • Likely Quarternary Molecular Structure file(s) for 2I1M
  • Structure Factors (270 Kb)
  • Retrieve 2I1M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2I1M from S2C, [Save to disk]
  • Re-refined 2i1m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2I1M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2I1M
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2I1M, from MSDmotif at EBI
  • Fold representative 2i1m from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2i1m_A] [2i1m]
  • SWISS-PROT database: [P07333]
  • Domain organization of [CSF1R_HUMAN] by SWISSPFAM
  • Domain found in 2I1M: [TyrKc ] by SMART
  • Other resources with information on 2I1M
  • Community annotation for 2I1M at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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