2I2Z Lipid Binding Protein date Aug 17, 2006
title Human Serum Albumin Complexed With Myristate And Aspirin
authors F.Yang, C.Bian, L.Zhu, G.Zhao, Z.Huang, M.Huang
compound source
Molecule: Serum Albumin
Chain: A
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: C 1 2 1
R_factor 0.218 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
188.409 38.936 96.018 90.00 105.32 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand ALY, MYR, SAL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceEffect of human serum albumin on drug metabolism: Structural evidence of esterase activity of human serum albumin., Yang F, Bian C, Zhu L, Zhao G, Huang Z, Huang M, J Struct Biol. 2006 Sep 9;. PMID:17067818
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (2i2z.pdb1.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 2I2Z
  • CSU: Contacts of Structural Units for 2I2Z
  • Likely Quarternary Molecular Structure file(s) for 2I2Z
  • Structure Factors (291 Kb)
  • Retrieve 2I2Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2I2Z from S2C, [Save to disk]
  • Re-refined 2i2z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2I2Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2I2Z
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2I2Z, from MSDmotif at EBI
  • Fold representative 2i2z from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2i2z_A] [2i2z]
  • SWISS-PROT database: [P02768]
  • Domain organization of [ALBU_HUMAN] by SWISSPFAM
  • Domain found in 2I2Z: [ALBUMIN ] by SMART
  • Alignments of the sequence of 2I2Z with the sequences similar proteins can be viewed for 2I2Z's classification [ALBU_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [ALBU_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2I2Z
  • Community annotation for 2I2Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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