2I47	Hydrolase	date	Aug 21, 2006
title	Crystal Structure Of Catalytic Domain Of Tace With Inhibitor
authors	W.Xu, J.S.Condon, F.E.Lovering
compound		source
Molecule: Adam 17 Chain: A, B, C, D Fragment: Catalytic Domain Synonym: Tace, A Disintegrin And Metalloproteinase Domain 1 Alpha-Converting Enzyme, Tnf-Alpha Convertase, Snake Venom- Protease, Cd156b Antigen; Ec: 3.4.24.86 Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 1 21 1	R_factor 0.198 R_Free 0.227
crystal cell	length a length b length c angle alpha angle beta angle gamma 61.775 126.193 81.224 90.00 107.41 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	INN, KGY, ZN BindingDB	enzyme	Hydrolase E.C.3.4.24.86 BRENDA
Primary reference	Identification of potent and selective TACE inhibitors via the S1 pocket., Condon JS, Joseph-McCarthy D, Levin JI, Lombart HG, Lovering FE, Sun L, Wang W, Xu W, Zhang Y, Bioorg Med Chem Lett. 2006 Oct 5;. PMID:17064892

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (187 Kb) [Save to disk] Biological Unit Coordinates (2i47.pdb1.gz) 49 Kb Biological Unit Coordinates (2i47.pdb2.gz) 47 Kb Biological Unit Coordinates (2i47.pdb3.gz) 48 Kb Biological Unit Coordinates (2i47.pdb4.gz) 48 Kb LPC: Ligand-Protein Contacts for 2I47 CSU: Contacts of Structural Units for 2I47 Likely Quarternary Molecular Structure file(s) for 2I47 Structure Factors (780 Kb) Retrieve 2I47 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2I47 from S2C, [Save to disk] Re-refined 2i47 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2I47 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 2I47

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 2I47, from MSDmotif at EBI Fold representative 2i47 from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2i47_A] [2i47_B] [2i47_C] [2i47_D] SWISS-PROT database: [P78536] Domain organization of [ADA17_HUMAN] by SWISSPFAM Alignments of the sequence of 2I47 with the sequences similar proteins can be viewed for 2I47's classification [ADA17_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [ADA17_HUMAN] at ProtoMap. Click on the Cluster number.

Other resources with information on 2I47

Community annotation for 2I47 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2010 Bioinformatics Unit Weizmann Institute of Science

---