2I47 Hydrolase date Aug 21, 2006
title Crystal Structure Of Catalytic Domain Of Tace With Inhibitor
authors W.Xu, J.S.Condon, F.E.Lovering
compound source
Molecule: Adam 17
Chain: A, B, C, D
Fragment: Catalytic Domain
Synonym: Tace, A Disintegrin And Metalloproteinase Domain 1 Alpha-Converting Enzyme, Tnf-Alpha Convertase, Snake Venom- Protease, Cd156b Antigen;
Ec: 3.4.24.86
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.198 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.775 126.193 81.224 90.00 107.41 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand INN, KGY, ZN BindingDB enzyme Hydrolase E.C.3.4.24.86 BRENDA
Primary referenceIdentification of potent and selective TACE inhibitors via the S1 pocket., Condon JS, Joseph-McCarthy D, Levin JI, Lombart HG, Lovering FE, Sun L, Wang W, Xu W, Zhang Y, Bioorg Med Chem Lett. 2006 Oct 5;. PMID:17064892
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (187 Kb) [Save to disk]
  • Biological Unit Coordinates (2i47.pdb1.gz) 49 Kb
  • Biological Unit Coordinates (2i47.pdb2.gz) 47 Kb
  • Biological Unit Coordinates (2i47.pdb3.gz) 48 Kb
  • Biological Unit Coordinates (2i47.pdb4.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 2I47
  • CSU: Contacts of Structural Units for 2I47
  • Likely Quarternary Molecular Structure file(s) for 2I47
  • Structure Factors (755 Kb)
  • Retrieve 2I47 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2I47 from S2C, [Save to disk]
  • Re-refined 2i47 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2I47 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2I47
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2I47, from MSDmotif at EBI
  • Fold representative 2i47 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2i47_C] [2i47_A] [2i47_D] [2i47_B] [2i47]
  • SWISS-PROT database: [P78536]
  • Domain organization of [ADA17_HUMAN] by SWISSPFAM
  • Other resources with information on 2I47
  • Community annotation for 2I47 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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