2I52 Structural Genomics, Unknown Function date Aug 23, 2006
title Crystal Structure Of Protein Pto0218 From Picrophilus Torrid Duf372
authors U.A.Ramagopal, J.Gilmore, R.Toro, K.T.Bain, C.Mckenzie, C.Reyes, J.M.Sauder, S.K.Burley, S.C.Almo, New York Sgx Research Center Structural Genomics (Nysgxrc)
compound source
Molecule: Hypothetical Protein
Chain: A, B, C, D, E, F
Engineered: Yes
 Organism_scientific: Picrophilus Torridus
Organism_taxid: 263820
Strain: Dsm 9790
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-Codon+Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Bs-Psgx4(Bs)
symmetry Space Group: C 2 2 21
R_factor 0.176 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.764 143.485 129.799 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.08 Å
ligand CA, CL, GOL enzyme
note 2I52 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (138 Kb) [Save to disk]
  • Biological Unit Coordinates (2i52.pdb1.gz) 85 Kb
  • Biological Unit Coordinates (2i52.pdb2.gz) 89 Kb
  • Biological Unit Coordinates (2i52.pdb3.gz) 254 Kb
  • Biological Unit Coordinates (2i52.pdb4.gz) 255 Kb
  • LPC: Ligand-Protein Contacts for 2I52
  • CSU: Contacts of Structural Units for 2I52
  • Likely Quarternary Molecular Structure file(s) for 2I52
  • Structure Factors (942 Kb)
  • Retrieve 2I52 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2I52 from S2C, [Save to disk]
  • Re-refined 2i52 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2I52 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2I52
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2I52, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2i52_F] [2i52] [2i52_E] [2i52_D] [2i52_A] [2i52_B] [2i52_C]
  • SWISS-PROT database: [Q6L2J9]
  • Domain organization of [Q6L2J9_PICTO] by SWISSPFAM
    • Other resources with information on 2I52
  • Community annotation for 2I52 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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