2I5O Transferase date Aug 25, 2006
title Solution Structure Of The Ubiquitin-Binding Zinc Finger (Ubz) Domain Of The Human Dna Y-Polymerase Eta
authors P.Zhou, M.G.Bomar
compound source
Molecule: Dna Polymerase Eta
Chain: A
Fragment: Ubiquitin-Binding Zinc Finger (Ubz)
Synonym: Rad30 Homolog A, Xeroderma Pigmentosum Variant Type Protein;
Ec: 2.7.7.7
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Polh
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Star
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
methodSolution NMR
ligand ZN enzyme Transferase E.C.2.7.7.7 BRENDA
note 2I5O is a representative structure
Primary referenceStructure of the ubiquitin-binding zinc finger domain of human DNA Y-polymerase eta., Bomar MG, Pai MT, Tzeng SR, Li SS, Zhou P, EMBO Rep. 2007 Mar;8(3):247-51. Epub 2007 Feb 16. PMID:17304240
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (133 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 2I5O
  • CSU: Contacts of Structural Units for 2I5O
  • Original NMR restraints for 2I5O from PDB
  • Retrieve 2I5O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2I5O from S2C, [Save to disk]
  • View 2I5O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2I5O
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2I5O, from MSDmotif at EBI
  • Fold representative 2i5o from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2i5o] [2i5o_A]
  • SWISS-PROT database: [Q9Y253]
  • Domain organization of [POLH_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 2I5O with the sequences similar proteins can be viewed for 2I5O's classification [POLH_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [POLH_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2I5O
  • Community annotation for 2I5O at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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