2I83 Cell Adhesion date Sep 01, 2006
title Hyaluronan-Binding Domain Of Cd44 In Its Ligand-Bound Form
authors M.Takeda, S.Ogino, R.Umemoto, M.Sakakura, M.Kajiwara, K.N.Sugahara, H.Hayasaka, M.Miyasaka, H.Terasawa, I.Shimada
compound source
Molecule: Cd44 Antigen
Chain: A
Fragment: Hyaluronan Binding Domain Residue 21-178
Synonym: Phagocytic Glycoprotein I, Pgp-1, Hutch-I, Extracellular Matrix Receptor-III, Ecmr-III, Gp90 Lymphocyte Homingadhesion Receptor, Hermes Antigen, Hyaluronate Receptor, Heparan Sulfate Proteoglycan, Epican, Cdw44;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11
methodSolution NMR

Primary referenceLigand-induced structural changes of the CD44 hyaluronan-binding domain revealed by NMR., Takeda M, Ogino S, Umemoto R, Sakakura M, Kajiwara M, Sugahara KN, Hayasaka H, Miyasaka M, Terasawa H, Shimada I, J Biol Chem. 2006 Nov 2;. PMID:17085435
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (748 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2I83
  • Original NMR restraints for 2I83 from PDB
  • Retrieve 2I83 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2I83 from S2C, [Save to disk]
  • View 2I83 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2I83
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2I83, from MSDmotif at EBI
  • Fold representative 2i83 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2i83] [2i83_A]
  • SWISS-PROT database: [P16070]
  • Domain organization of [CD44_HUMAN] by SWISSPFAM
  • Domain found in 2I83: [LINK ] by SMART
  • Other resources with information on 2I83
  • Community annotation for 2I83 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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