2I9T	Transcription Dna	date	Sep 06, 2006
title	Structure Of Nf-Kb P65-P50 Heterodimer Bound To Prdii Elemen Interferon Promoter
authors	C.R.Escalante, L.Shen, D.Thanos, A.K.Aggarwal
compound		source
Molecule: 5'-D(Apgptpgpgpgpapapaptptpcpcptpc 3'; Chain: C Engineered: Yes Other_details: Prdii Dna Element		Synthetic: Yes
Molecule: 5'-D(Cpapgpapgpgpapaptptptpcpcpcpa 3'; Chain: D Engineered: Yes		Synthetic: Yes
Molecule: Transcription Factor P65 Chain: A Fragment: Residues 19-291 Synonym: Nuclear Factor Nf-Kappa-B P65 Subunit Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Gene: Rela, Nfkb3 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-15b
Molecule: Nuclear Factor Nf-Kappa-B P105 Subunit Chain: B Fragment: Residues 39-350 Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Gene: Nfkb1 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-9a
symmetry	Space Group: P 21 21 2	R_factor 0.233 R_Free 0.288
crystal cell	length a length b length c angle alpha angle beta angle gamma 97.620 166.110 60.050 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
Gene Ontology	Chain Function Process Component A B
Primary reference	Structure of NF-kappaB p50/p65 heterodimer bound to the PRDII DNA element from the interferon-beta promoter., Escalante CR, Shen L, Thanos D, Aggarwal AK, Structure. 2002 Mar;10(3):383-91. PMID:12005436

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk] Biological Unit Coordinates (2i9t.pdb1.gz) 105 Kb CSU: Contacts of Structural Units for 2I9T Likely Quarternary Molecular Structure file(s) for 2I9T Structure Factors (179 Kb) Retrieve 2I9T in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2I9T from S2C, [Save to disk] Re-refined 2i9t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2I9T in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2I9T

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2I9T, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2i9t_D] [2i9t] [2i9t_B] [2i9t_A] [2i9t_C] SWISS-PROT database: [P25799] [Q04207] Domain organization of [NFKB1_MOUSE] [TF65_MOUSE] by SWISSPFAM Domain found in 2I9T: [IPT ] by SMART

Other resources with information on 2I9T

Community annotation for 2I9T at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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