2ICC Immune System date Sep 12, 2006
title Extracellular Domain Of Crig
authors C.Wiesmann
compound source
Molecule: V-Set And Immunoglobulin Domain-Containing Protei
Chain: A
Fragment: Extracellular Domain Of Crig
Synonym: Protein Z39ig
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Vsig4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.134 R_Free 0.172
crystal
cell
length a length b length c angle alpha angle beta angle gamma
30.257 50.757 61.965 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.20 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of C3b in complex with CRIg gives insights into regulation of complement activation., Wiesmann C, Katschke KJ, Yin J, Helmy KY, Steffek M, Fairbrother WJ, McCallum SA, Embuscado L, DeForge L, Hass PE, van Lookeren Campagne M, Nature. 2006 Nov 9;444(7116):217-20. Epub 2006 Oct 15. PMID:17051150
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (2icc.pdb1.gz) 46 Kb
  • CSU: Contacts of Structural Units for 2ICC
  • Likely Quarternary Molecular Structure file(s) for 2ICC
  • Structure Factors (205 Kb)
  • Retrieve 2ICC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ICC from S2C, [Save to disk]
  • Re-refined 2icc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2ICC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2ICC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ICC, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2icc] [2icc_A]
  • SWISS-PROT database: [Q9Y279]
  • Domain organization of [VSIG4_HUMAN] by SWISSPFAM
  • Domain found in 2ICC: [IG ] by SMART
    • Other resources with information on 2ICC
  • Community annotation for 2ICC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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