2IDH Protein Binding date Sep 15, 2006
title Crystal Structure Of Human Fe65 Ww Domain
authors M.Meiyappan, G.Birrane, J.A.A.Ladias
compound source
Molecule: Amyloid Beta A4 Protein-Binding Family B Member 1;
Chain: A, B, C, D, E, F, G, H
Fragment: Ww Domain
Synonym: Fe65 Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Apbb1, Fe65
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-Kt
symmetry Space Group: P 63 2 2
R_factor 0.217 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.610 75.610 226.489 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.28 Å
ligand PG4, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Primary referenceStructural Basis for Polyproline Recognition by the FE65 WW Domain., Meiyappan M, Birrane G, Ladias JA, J Mol Biol. 2007 Sep 28;372(4):970-80. Epub 2007 Jun 29. PMID:17686488
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (2idh.pdb1.gz) 7 Kb
  • Biological Unit Coordinates (2idh.pdb2.gz) 6 Kb
  • Biological Unit Coordinates (2idh.pdb3.gz) 7 Kb
  • Biological Unit Coordinates (2idh.pdb4.gz) 7 Kb
  • Biological Unit Coordinates (2idh.pdb5.gz) 7 Kb
  • Biological Unit Coordinates (2idh.pdb6.gz) 7 Kb
  • Biological Unit Coordinates (2idh.pdb7.gz) 7 Kb
  • Biological Unit Coordinates (2idh.pdb8.gz) 7 Kb
  • LPC: Ligand-Protein Contacts for 2IDH
  • CSU: Contacts of Structural Units for 2IDH
  • Likely Quarternary Molecular Structure file(s) for 2IDH
  • Structure Factors (286 Kb)
  • Retrieve 2IDH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2IDH from S2C, [Save to disk]
  • Re-refined 2idh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2IDH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2IDH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2IDH, from MSDmotif at EBI
  • Fold representative 2idh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2idh_B] [2idh_F] [2idh] [2idh_A] [2idh_C] [2idh_D] [2idh_G] [2idh_E] [2idh_H]
  • SWISS-PROT database: [O00213]
  • Domain organization of [APBB1_HUMAN] by SWISSPFAM
  • Domain found in 2IDH: [WW ] by SMART
  • Other resources with information on 2IDH
  • Community annotation for 2IDH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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