2IPV Membrane Protein date Oct 12, 2006
title Homology Model Of Nr2b Subunit Of Nmda Receptor In Complex With Glutamate
authors P.A.Abreu, M.G.Albuquerque, C.R.Rodrigues, R.Paes-De-Carvalho, S.Pinheiro, H.C.Castro
compound source
Molecule: Glutamate Binding Site Of Nr2b Subunit Of Nmda Receptor;
Chain: X
Organism_scientific: Homo Sapiens
Organism_common: Human
methodTheoretical Model
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2IPV
  • View 2IPV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2IPV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 2ipv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • SWISS-PROT database: [Q13224]
  • Domain organization of [NMDE2_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 2IPV with the sequences similar proteins can be viewed for 2IPV's classification [NMDE2_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [NMDE2_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2IPV
  • Community annotation for 2IPV at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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