2IQT Lyase date Oct 14, 2006
title Crystal Structure Of Fructose-Bisphosphate Aldolase, Class I Porphyromonas Gingivalis
authors Y.Kim, M.Zhou, S.Moy, A.Joachimiak, Midwest Center For Structura Genomics (Mcsg)
compound source
Molecule: Fructose-Bisphosphate Aldolase Class 1
Chain: A
Synonym: Fructose-Biphosphate Aldolase Class I, Fbp Aldolas
Ec: 4.1.2.13
Engineered: Yes
Organism_scientific: Porphyromonas Gingivalis
Organism_taxid: 242619
Strain: W83
Gene: Fbab
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21de3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: P 31 2 1
R_factor 0.182 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.737 68.737 154.113 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.46 Å
ligand MSE enzyme Lyase E.C.4.1.2.13 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (2iqt.pdb1.gz) 104 Kb
  • LPC: Ligand-Protein Contacts for 2IQT
  • CSU: Contacts of Structural Units for 2IQT
  • Likely Quarternary Molecular Structure file(s) for 2IQT
  • Structure Factors (280 Kb)
  • Retrieve 2IQT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2IQT from S2C, [Save to disk]
  • Re-refined 2iqt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2IQT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2IQT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2IQT, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2iqt] [2iqt_A]
  • SWISS-PROT database: [P60053]
  • Domain organization of [ALF1_PORGI] by SWISSPFAM
  • Other resources with information on 2IQT
  • Community annotation for 2IQT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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