2IVS Transferase date Jun 16, 2006
title Crystal Structure Of Non-Phosphorylated Ret Tyrosine Kinase
authors P.P.Knowles, J.Murray-Rust, N.Q.Mcdonald
compound source
Molecule: Proto-Oncogene Tyrosine-Protein Kinase Receptor R
Chain: A, B
Fragment: Tyrosine Kinase Domain, Unp Residues 705-1013
Synonym: Ret Receptor, C-Ret
Engineered: Yes
Other_details: 5 N-Terminal Vector-Derived Residues Gplsl
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pbacpak-His3
symmetry Space Group: P 1 21 1
R_factor 0.180 R_Free 0.229
length a length b length c angle alpha angle beta angle gamma
50.399 80.217 79.684 90.00 100.09 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand ACK, FMT enzyme Transferase E.C. BRENDA
A, B

Primary referenceStructure and chemical inhibition of the RET tyrosine kinase domain., Knowles PP, Murray-Rust J, Kjaer S, Scott RP, Hanrahan S, Santoro M, Ibanez CF, McDonald NQ, J Biol Chem. 2006 Nov 3;281(44):33577-87. Epub 2006 Aug 23. PMID:16928683
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (2ivs.pdb1.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 2IVS
  • CSU: Contacts of Structural Units for 2IVS
  • Likely Quarternary Molecular Structure file(s) for 2IVS
  • Retrieve 2IVS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2IVS from S2C, [Save to disk]
  • View 2IVS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2IVS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2IVS, from MSDmotif at EBI
  • Fold representative 2ivs from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ivs] [2ivs_A] [2ivs_B]
  • SWISS-PROT database: [P07949]
  • Domain organization of [RET_HUMAN] by SWISSPFAM
  • Domain found in 2IVS: [TyrKc ] by SMART
  • Other resources with information on 2IVS
  • Community annotation for 2IVS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science