2IVU Transferase date Jun 16, 2006
title Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Complexed With The Inhibitor Zd6474
authors P.P.Knowles, J.Murray-Rust, N.Q.Mcdonald
compound source
Molecule: Proto-Oncogene Tyrosine-Protein Kinase Receptor Ret Precursor;
Chain: A
Fragment: Tyrosine Kinase Domain, Residues 705-1013
Synonym: Ret Receptor, C-Ret
Ec: 2.7.10.1
Engineered: Yes
Other_details: Ptr At 905
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pbacpak-His3
symmetry Space Group: C 1 2 1
R_factor 0.190 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.409 71.420 78.834 90.00 101.23 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand FMT, PTR, ZD6 BindingDB enzyme Transferase E.C.2.7.10.1 BRENDA
Primary referenceStructure and chemical inhibition of the RET tyrosine kinase domain., Knowles PP, Murray-Rust J, Kjaer S, Scott RP, Hanrahan S, Santoro M, Ibanez CF, McDonald NQ, J Biol Chem. 2006 Nov 3;281(44):33577-87. Epub 2006 Aug 23. PMID:16928683
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (2ivu.pdb1.gz) 93 Kb
  • LPC: Ligand-Protein Contacts for 2IVU
  • CSU: Contacts of Structural Units for 2IVU
  • Likely Quarternary Molecular Structure file(s) for 2IVU
  • Retrieve 2IVU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2IVU from S2C, [Save to disk]
  • View 2IVU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2IVU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2IVU, from MSDmotif at EBI
  • Fold representative 2ivu from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ivu] [2ivu_A]
  • SWISS-PROT database: [P07949]
  • Domain organization of [RET_HUMAN] by SWISSPFAM
  • Domain found in 2IVU: [TyrKc ] by SMART
  • Other resources with information on 2IVU
  • Community annotation for 2IVU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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