2IYV Transferase date Jul 22, 2006
title Shikimate Kinase From Mycobacterium Tuberculosis In Complex Open Lid (Conf. B)
authors M.D.Hartmann, G.P.Bourenkov, A.Oberschall, N.Strizhov, H.D.Bartu
compound source
Molecule: Shikimate Kinase
Chain: A
Synonym: Sk
Ec: 2.7.1.71
Engineered: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 83332
Strain: H37rv
Atcc: 25618
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.138 R_Free 0.178
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.618 44.193 51.289 90.00 109.13 90.00
method X-Ray Diffractionresolution 1.35 Å
ligand ADP, CL enzyme Transferase E.C.2.7.1.71 BRENDA
note 2IYV is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMechanism of phosphoryl transfer catalyzed by shikimate kinase from Mycobacterium tuberculosis., Hartmann MD, Bourenkov GP, Oberschall A, Strizhov N, Bartunik HD, J Mol Biol. 2006 Dec 1;364(3):411-23. Epub 2006 Sep 5. PMID:17020768
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (2iyv.pdb1.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 2IYV
  • CSU: Contacts of Structural Units for 2IYV
  • Likely Quarternary Molecular Structure file(s) for 2IYV
  • Structure Factors (446 Kb)
  • Retrieve 2IYV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2IYV from S2C, [Save to disk]
  • Re-refined 2iyv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2IYV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2IYV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2IYV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2iyv_A] [2iyv]
  • SWISS-PROT database: [P0A4Z2]
  • Domain organization of [AROK_MYCTU] by SWISSPFAM
  • Other resources with information on 2IYV
  • Community annotation for 2IYV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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