2J06 Signal Transduction date Aug 01, 2006
title Crystal Structure Of The Rasgap Sh3 Domain At 1.8 Angstrom Resolution
authors B.Ross, M.Gajhede, O.Kristensen
compound source
Molecule: Ras Gtpase-Activating Protein 1
Chain: A, B
Fragment: Sh3 Domain, Residues 281-341
Synonym: Gtpase-Activating Protein, Gap, Ras P21 Protein Activator, P120gap, Rasgap;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector: Pet28a
symmetry Space Group: P 61
R_factor 0.208 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.610 33.610 196.330 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.8 Å
ligand MSE enzyme
Primary referenceHigh resolution crystal structures of the p120 RasGAP SH3 domain., Ross B, Kristensen O, Favre D, Walicki J, Kastrup JS, Widmann C, Gajhede M, Biochem Biophys Res Commun. 2007 Feb 9;353(2):463-8. Epub 2006 Dec 18. PMID:17188236
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk]
  • Biological Unit Coordinates (2j06.pdb1.gz) 23 Kb
  • LPC: Ligand-Protein Contacts for 2J06
  • CSU: Contacts of Structural Units for 2J06
  • Likely Quarternary Molecular Structure file(s) for 2J06
  • Structure Factors (149 Kb)
  • Retrieve 2J06 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J06 from S2C, [Save to disk]
  • Re-refined 2j06 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2J06 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2J06
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2J06, from MSDmotif at EBI
  • Fold representative 2j06 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j06_B] [2j06] [2j06_A]
  • SWISS-PROT database: [P20936]
  • Domain organization of [RASA1_HUMAN] by SWISSPFAM
  • Domain found in 2J06: [SH3 ] by SMART
  • Other resources with information on 2J06
  • Community annotation for 2J06 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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